feat: 添加工具类增强与状态管理改进

- 新增 workflowRuns、remoteTriggerAudit、pipeStatus 等工具
- 增强 permissionSetup: auto mode 和 bypass permissions 始终可用
- 新增多组测试覆盖 (modifiers, teamDiscovery, deepLink 等)
- 修复 parseInt 缺少 radix 参数
- 移除多余 biome-ignore 注释

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

src/utils/worktree.ts

@@ -1268,7 +1268,6 @@ export async function execIntoTmuxWorktree(args: string[]): Promise<{
       }
     }
     repoName = basename(findCanonicalGitRoot(getCwd()) ?? getCwd())
-    // biome-ignore lint/suspicious/noConsole: intentional console output
     console.log(`Using worktree via hook: ${worktreeDir}`)
   } else {
     // Get main git repo root (resolves through worktrees)
@@ -1291,7 +1290,6 @@ export async function execIntoTmuxWorktree(args: string[]): Promise<{
         prNumber !== null ? { prNumber } : undefined,
       )
       if (!result.existed) {
-        // biome-ignore lint/suspicious/noConsole: intentional console output
         console.log(
           `Created worktree: ${worktreeDir} (based on ${(result as any).baseBranch})`,
         )
@@ -1383,7 +1381,6 @@ export async function execIntoTmuxWorktree(args: string[]): Promise<{
   // Print hint about iTerm2 preferences when using control mode
   if (useControlMode && !sessionExists) {
     const y = chalk.yellow
-    // biome-ignore lint/suspicious/noConsole: intentional user guidance
     console.log(
       `\n${y('╭─ iTerm2 Tip ────────────────────────────────────────────────────────╮')}\n` +
         `${y('│')} To open as a tab instead of a new window:                           ${y('│')}\n` +