feat: 添加工具类增强与状态管理改进

- 新增 workflowRuns、remoteTriggerAudit、pipeStatus 等工具
- 增强 permissionSetup: auto mode 和 bypass permissions 始终可用
- 新增多组测试覆盖 (modifiers, teamDiscovery, deepLink 等)
- 修复 parseInt 缺少 radix 参数
- 移除多余 biome-ignore 注释

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

src/utils/thinking.ts

@@ -118,10 +118,14 @@ export function modelSupportsAdaptiveThinking(model: string): boolean {
   }
   const canonical = getCanonicalName(model)
   // Supported by a subset of Claude 4 models
-  if (canonical.includes('opus-4-6') || canonical.includes('sonnet-4-6')) {
+  if (
+    canonical.includes('opus-4-7') ||
+    canonical.includes('opus-4-6') ||
+    canonical.includes('sonnet-4-6')
+  ) {
     return true
   }
-  // Exclude any other known legacy models (allowlist above catches 4-6 variants first)
+  // Exclude any other known legacy models (allowlist above catches 4-6+ variants first)
   if (
     canonical.includes('opus') ||
     canonical.includes('sonnet') ||