feat: 添加工具类增强与状态管理改进

- 新增 workflowRuns、remoteTriggerAudit、pipeStatus 等工具
- 增强 permissionSetup: auto mode 和 bypass permissions 始终可用
- 新增多组测试覆盖 (modifiers, teamDiscovery, deepLink 等)
- 修复 parseInt 缺少 radix 参数
- 移除多余 biome-ignore 注释

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

src/utils/promptEditor.ts

@@ -114,7 +114,7 @@ function recollapsePastedContent(
   // Find pasted content in the edited text and re-collapse it
   for (const [id, content] of Object.entries(pastedContents)) {
     if (content.type === 'text') {
-      const pasteId = parseInt(id)
+      const pasteId = parseInt(id, 10)
       const contentStr = content.content
 
       // Check if this exact content exists in the edited prompt