feat: 添加工具类增强与状态管理改进

- 新增 workflowRuns、remoteTriggerAudit、pipeStatus 等工具
- 增强 permissionSetup: auto mode 和 bypass permissions 始终可用
- 新增多组测试覆盖 (modifiers, teamDiscovery, deepLink 等)
- 修复 parseInt 缺少 radix 参数
- 移除多余 biome-ignore 注释

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

src/utils/process.ts

@@ -36,7 +36,6 @@ export function writeToStderr(data: string): void {
 // Write error to stderr and exit with code 1. Consolidates the
 // console.error + process.exit(1) pattern used in entrypoint fast-paths.
 export function exitWithError(message: string): never {
-  // biome-ignore lint/suspicious/noConsole:: intentional console output
   console.error(message)
   // eslint-disable-next-line custom-rules/no-process-exit
   process.exit(1)