feat: 添加工具类增强与状态管理改进

- 新增 workflowRuns、remoteTriggerAudit、pipeStatus 等工具
- 增强 permissionSetup: auto mode 和 bypass permissions 始终可用
- 新增多组测试覆盖 (modifiers, teamDiscovery, deepLink 等)
- 修复 parseInt 缺少 radix 参数
- 移除多余 biome-ignore 注释

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

src/utils/plugins/schemas.ts

@@ -645,6 +645,7 @@ const PluginManifestUserConfigSchema = lazySchema(() =>
       .describe(
         'User-configurable values this plugin needs. Prompted at enable time. ' +
           'Non-sensitive values saved to settings.json; sensitive values to secure storage ' +
+          // biome-ignore lint/suspicious/noTemplateCurlyInString: ${user_config.KEY} is plugin config syntax documentation, not a JS template literal
           '(macOS keychain or .credentials.json). Available as ${user_config.KEY} in ' +
           'MCP/LSP server config, hook commands, and (non-sensitive only) skill/agent content. ' +
           'Note: sensitive values share a single keychain entry with OAuth tokens — keep ' +
@@ -690,6 +691,7 @@ const PluginManifestChannelsSchema = lazySchema(() =>
               .optional()
               .describe(
                 'Fields to prompt the user for when enabling this plugin in assistant mode. ' +
+                  // biome-ignore lint/suspicious/noTemplateCurlyInString: ${user_config.KEY} is plugin config syntax documentation, not a JS template literal
                   'Saved values are substituted into ${user_config.KEY} references in the mcpServers env.',
               ),
           })