feat: 添加工具类增强与状态管理改进

- 新增 workflowRuns、remoteTriggerAudit、pipeStatus 等工具
- 增强 permissionSetup: auto mode 和 bypass permissions 始终可用
- 新增多组测试覆盖 (modifiers, teamDiscovery, deepLink 等)
- 修复 parseInt 缺少 radix 参数
- 移除多余 biome-ignore 注释

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

src/utils/log.ts

@@ -158,7 +158,6 @@ const isHardFailMode = memoize((): boolean => {
 export function logError(error: unknown): void {
   const err = toError(error)
   if (feature('HARD_FAIL') && isHardFailMode()) {
-    // biome-ignore lint/suspicious/noConsole:: intentional crash output
     console.error('[HARD FAIL] logError called with:', err.stack || err.message)
     // eslint-disable-next-line custom-rules/no-process-exit
     process.exit(1)