feat: 添加工具类增强与状态管理改进

- 新增 workflowRuns、remoteTriggerAudit、pipeStatus 等工具
- 增强 permissionSetup: auto mode 和 bypass permissions 始终可用
- 新增多组测试覆盖 (modifiers, teamDiscovery, deepLink 等)
- 修复 parseInt 缺少 radix 参数
- 移除多余 biome-ignore 注释

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

src/utils/frontmatterParser.ts

@@ -35,7 +35,7 @@ export type FrontmatterData = {
   // Values are arrays of matcher configurations with hooks
   // Validated by HooksSchema in loadSkillsDir.ts
   hooks?: HooksSettings | null
-  // Effort level for agents (e.g., 'low', 'medium', 'high', 'max', or an integer)
+  // Effort level for agents (e.g., 'low', 'medium', 'high', 'xhigh', 'max', or an integer)
   // Controls the thinking effort used by the agent's model
   effort?: string | null
   // Execution context for skills: 'inline' (default) or 'fork' (run as sub-agent)