feat: 添加工具类增强与状态管理改进

- 新增 workflowRuns、remoteTriggerAudit、pipeStatus 等工具
- 增强 permissionSetup: auto mode 和 bypass permissions 始终可用
- 新增多组测试覆盖 (modifiers, teamDiscovery, deepLink 等)
- 修复 parseInt 缺少 radix 参数
- 移除多余 biome-ignore 注释

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

src/utils/bash/ShellSnapshot.ts

@@ -421,6 +421,7 @@ export const createAndSaveSnapshot = async (
 
   logForDebugging(`Creating shell snapshot for ${shellType} (${binShell})`)
 
+  // biome-ignore lint/suspicious/noAsyncPromiseExecutor: async needed for sequential awaits inside executor
   return new Promise(async resolve => {
     try {
       const configFile = getConfigFile(binShell)

src/utils/bash/ast.ts

@@ -251,6 +251,7 @@ const BRACE_EXPANSION_RE = /\{[^{}\s]*(,|\.\.)[^{}\s]*\}/
  * word boundaries.
  */
 // eslint-disable-next-line no-control-regex
+// biome-ignore lint/suspicious/noControlCharactersInRegex: intentional control character detection regex
 const CONTROL_CHAR_RE = /[\x00-\x08\x0B-\x1F\x7F]/
 
 /**
@@ -1899,6 +1900,7 @@ function walkVariableAssignment(
       return {
         kind: 'too-complex',
         reason:
+          // biome-ignore lint/suspicious/noTemplateCurlyInString: ${VAR} is bash syntax documentation, not a JS template literal
           'PS4 value outside safe charset — only ${VAR} refs and [A-Za-z0-9 _+:.=/[]-] allowed',
         nodeType: 'variable_assignment',
       }