feat: 添加工具类增强与状态管理改进

- 新增 workflowRuns、remoteTriggerAudit、pipeStatus 等工具
- 增强 permissionSetup: auto mode 和 bypass permissions 始终可用
- 新增多组测试覆盖 (modifiers, teamDiscovery, deepLink 等)
- 修复 parseInt 缺少 radix 参数
- 移除多余 biome-ignore 注释

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

src/utils/auth.ts

@@ -514,7 +514,6 @@ async function _runAndCache(
   } catch (e) {
     if (epoch !== _apiKeyHelperEpoch) return ' '
     const detail = e instanceof Error ? e.message : String(e)
-    // biome-ignore lint/suspicious/noConsole: user-configured script failed; must be visible without --debug
     console.error(chalk.red(`apiKeyHelper failed: ${detail}`))
     logForDebugging(`Error getting API key from apiKeyHelper: ${detail}`, {
       level: 'error',
@@ -690,7 +689,6 @@ export function refreshAwsAuth(awsAuthRefresh: string): Promise<boolean> {
           : chalk.red(
               'Error running awsAuthRefresh (in settings or ~/.claude.json):',
             )
-        // biome-ignore lint/suspicious/noConsole:: intentional console output
         console.error(message)
         authStatusManager.endAuthentication(false)
         void resolve(false)
@@ -769,10 +767,8 @@ async function getAwsCredsFromCredentialExport(): Promise<{
         'Error getting AWS credentials from awsCredentialExport (in settings or ~/.claude.json):',
       )
       if (e instanceof Error) {
-        // biome-ignore lint/suspicious/noConsole:: intentional console output
         console.error(message, e.message)
       } else {
-        // biome-ignore lint/suspicious/noConsole:: intentional console output
         console.error(message, e)
       }
       return null
@@ -958,7 +954,6 @@ export function refreshGcpAuth(gcpAuthRefresh: string): Promise<boolean> {
           : chalk.red(
               'Error running gcpAuthRefresh (in settings or ~/.claude.json):',
             )
-        // biome-ignore lint/suspicious/noConsole:: intentional console output
         console.error(message)
         authStatusManager.endAuthentication(false)
         void resolve(false)
@@ -1779,6 +1774,7 @@ export function getOtelHeadersFromHelper(): Record<string, string> {
   const debounceMs = parseInt(
     process.env.CLAUDE_CODE_OTEL_HEADERS_HELPER_DEBOUNCE_MS ||
       DEFAULT_OTEL_HEADERS_DEBOUNCE_MS.toString(),
+    10,
   )
   if (
     cachedOtelHeaders &&