feat: 添加工具类增强与状态管理改进

- 新增 workflowRuns、remoteTriggerAudit、pipeStatus 等工具
- 增强 permissionSetup: auto mode 和 bypass permissions 始终可用
- 新增多组测试覆盖 (modifiers, teamDiscovery, deepLink 等)
- 修复 parseInt 缺少 radix 参数
- 移除多余 biome-ignore 注释

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

src/utils/attachments.ts

@@ -536,9 +536,25 @@ export type Attachment =
     }
   | {
       type: 'skill_discovery'
-      skills: { name: string; description: string; shortId?: string }[]
+      skills: {
+        name: string
+        description: string
+        shortId?: string
+        score?: number
+        autoLoaded?: boolean
+        content?: string
+        path?: string
+      }[]
       signal: DiscoverySignal
       source: 'native' | 'aki' | 'both'
+      gap?: {
+        key: string
+        status: 'pending' | 'draft' | 'active'
+        draftName?: string
+        draftPath?: string
+        activeName?: string
+        activePath?: string
+      }
     }
   | {
       type: 'queued_command'