feat: 添加工具类增强与状态管理改进

- 新增 workflowRuns、remoteTriggerAudit、pipeStatus 等工具
- 增强 permissionSetup: auto mode 和 bypass permissions 始终可用
- 新增多组测试覆盖 (modifiers, teamDiscovery, deepLink 等)
- 修复 parseInt 缺少 radix 参数
- 移除多余 biome-ignore 注释

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

src/utils/__tests__/tokens.test.ts

@@ -30,6 +30,18 @@ mock.module("src/services/tokenEstimation.ts", () => ({
   countTokensViaHaikuFallback: async () => 0,
 }));
 
+// Mock slowOperations to avoid bun:bundle import
+mock.module('src/utils/slowOperations.ts', () => ({
+  jsonStringify: JSON.stringify,
+  jsonParse: JSON.parse,
+  slowLogging: { enabled: false },
+  clone: (v: any) => structuredClone(v),
+  cloneDeep: (v: any) => structuredClone(v),
+  callerFrame: () => '',
+  SLOW_OPERATION_THRESHOLD_MS: 100,
+  writeFileSync_DEPRECATED: () => {},
+}))
+
 const {
   getTokenCountFromUsage,
   getTokenUsage,