feat: 添加工具类增强与状态管理改进

- 新增 workflowRuns、remoteTriggerAudit、pipeStatus 等工具
- 增强 permissionSetup: auto mode 和 bypass permissions 始终可用
- 新增多组测试覆盖 (modifiers, teamDiscovery, deepLink 等)
- 修复 parseInt 缺少 radix 参数
- 移除多余 biome-ignore 注释

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

src/context/notifications.tsx

@@ -288,7 +288,6 @@ export function useNotifications(): {
   // Imperative read (not useAppState) — a subscription in a mount-only
   // effect would be vestigial and make every caller re-render on queue changes.
   // eslint-disable-next-line react-hooks/exhaustive-deps
-  // biome-ignore lint/correctness/useExhaustiveDependencies: mount-only effect, store is a stable context ref
   useEffect(() => {
     if (store.getState().notifications.queue.length > 0) {
       processQueue()