feat: 注册所有新命令到命令系统和工具注册表

- commands.ts: 注册所有新命令（memory-stores、vault、schedule 等），
  移除 require() 动态加载，统一为 ESM import
- tools.ts: 注册 LocalMemoryRecallTool、VaultHttpFetchTool
- 补充命令测试（bridge-kick、commit、commit-push-pr、init-verifiers）
- 补充工具测试（AgentTool、RemoteTrigger、SkillTool、WebFetch、WebSearch）
- 集成测试：autonomy-lifecycle-user-flow 更新
- 探测脚本和功能文档

Co-Authored-By: glm-5-turbo <zai-org@claude-code-best.win>

src/services/mcp/__tests__/officialRegistry.test.ts

@@ -1,9 +1,26 @@
-import { mock, describe, expect, test, afterEach } from 'bun:test'
+import {
+  mock,
+  describe,
+  expect,
+  test,
+  afterEach,
+  beforeAll,
+  afterAll,
+} from 'bun:test'
 import { debugMock } from '../../../../tests/mocks/debug'
+import { setupAxiosMock } from '../../../../tests/mocks/axios.js'
+
+const axiosHandle = setupAxiosMock()
+axiosHandle.stubs.get = async () => ({ data: { servers: [] } })
+
+beforeAll(() => {
+  axiosHandle.useStubs = true
+})
+
+afterAll(() => {
+  axiosHandle.useStubs = false
+})
 
-mock.module('axios', () => ({
-  default: { get: async () => ({ data: { servers: [] } }) },
-}))
 mock.module('src/utils/debug.ts', debugMock)
 
 const { isOfficialMcpUrl, resetOfficialMcpUrlsForTesting } = await import(