feat: 注册所有新命令到命令系统和工具注册表

- commands.ts: 注册所有新命令（memory-stores、vault、schedule 等），
  移除 require() 动态加载，统一为 ESM import
- tools.ts: 注册 LocalMemoryRecallTool、VaultHttpFetchTool
- 补充命令测试（bridge-kick、commit、commit-push-pr、init-verifiers）
- 补充工具测试（AgentTool、RemoteTrigger、SkillTool、WebFetch、WebSearch）
- 集成测试：autonomy-lifecycle-user-flow 更新
- 探测脚本和功能文档

Co-Authored-By: glm-5-turbo <zai-org@claude-code-best.win>

packages/builtin-tools/src/tools/WebSearchTool/__tests__/bingAdapter.test.ts

@@ -1,4 +1,12 @@
-import { describe, expect, mock, test } from 'bun:test'
+import { afterAll, describe, expect, mock, test } from 'bun:test'
+import { setupAxiosMock } from '../../../../../../tests/mocks/axios'
+
+// Each test below calls `mock.module('axios', ...)` per-test. Re-register a
+// spread-real axios mock at end-of-file so the per-test stubs do not leak
+// into subsequent test files (mock.module is process-global, last-write-wins).
+afterAll(() => {
+  setupAxiosMock()
+})
 
 const _abortMock = () => ({
   AbortError: class AbortError extends Error {

packages/builtin-tools/src/tools/WebSearchTool/__tests__/braveAdapter.test.ts

@@ -1,4 +1,22 @@
-import { afterEach, beforeEach, describe, expect, mock, test } from 'bun:test'
+import {
+  afterAll,
+  afterEach,
+  beforeEach,
+  describe,
+  expect,
+  mock,
+  test,
+} from 'bun:test'
+import { setupAxiosMock } from '../../../../../../tests/mocks/axios'
+
+// Each test below calls `mock.module('axios', ...)` per-test. Without an
+// afterAll cleanup, the LAST per-test stub leaks into every test file that
+// runs after this one (mock.module is process-global, last-write-wins). The
+// spread-real mock registered here at the end re-routes axios to the real
+// module, undoing the stub leakage so later suites see real axios.
+afterAll(() => {
+  setupAxiosMock()
+})
 
 // Defensive mock: agent.test.ts mocks config.js which can corrupt Bun's
 // src/* path alias resolution. Provide AbortError directly so the dynamic

packages/builtin-tools/src/tools/WebSearchTool/__tests__/exaAdapter.test.ts

@@ -1,4 +1,12 @@
-import { afterEach, describe, expect, mock, test } from 'bun:test'
+import { afterAll, afterEach, describe, expect, mock, test } from 'bun:test'
+import { setupAxiosMock } from '../../../../../../tests/mocks/axios'
+
+// Each test below calls `mock.module('axios', ...)` per-test. Re-register a
+// spread-real axios mock at end-of-file so the per-test stubs do not leak
+// into subsequent test files (mock.module is process-global, last-write-wins).
+afterAll(() => {
+  setupAxiosMock()
+})
 
 const _abortMock = () => ({
   AbortError: class AbortError extends Error {